3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07566

Details:

PFam ID : PF07566

PFam Domain Description : Domain of Unknown Function (DUF1543)

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 124

Average sequence length: 52.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07566	Q1QAV4_PSYCK_16_67	60

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07566	E4TRV5_MARTH_93_150	100

Sequence based PCA Plot of the family - PF07566 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=46 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay