3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07565

Details:

PFam ID : PF07565

PFam Domain Description : Band 3 cytoplasmic domain

Number of Sequence in 50% Dataset : 57

Number of Sequence in Full Dataset : 189

Average sequence length: 217.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07565	A8PRR9_BRUMA_109_181	75

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07565	Q9JL09_MOUSE_1_100	100

Sequence based PCA Plot of the family - PF07565 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=351 Length=8
Motif2 Start=335 Length=11
Motif3 Start=395 Length=8
Motif4 Start=8 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay