3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07564

Details:

PFam ID : PF07564

PFam Domain Description : Domain of Unknown Function (DUF1542)

Number of Sequence in 50% Dataset : 128

Number of Sequence in Full Dataset : 644

Average sequence length: 70.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07564	Q5FIP8_LACAC_2403_2470	67.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07564	E8KV99_STRVE_2023_2072	97.8

Sequence based PCA Plot of the family - PF07564 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay