3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07562

Details:

PFam ID : PF07562

PFam Domain Description : Nine Cysteines Domain of family 3 GPCR

Number of Sequence in 50% Dataset : 30

Number of Sequence in Full Dataset : 359

Average sequence length: 52.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07562	A7RX43_NEMVE_501_566	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07562	A7RX43_NEMVE_501_566	100

Sequence based PCA Plot of the family - PF07562 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=21 Length=17
Motif2 Start=42 Length=11
Motif3 Start=2 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay