3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07561

Details:

PFam ID : PF07561

PFam Domain Description : Domain of Unknown Function (DUF1540)

Number of Sequence in 50% Dataset : 41

Number of Sequence in Full Dataset : 366

Average sequence length: 40.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07561	D5WRY6_BACT2_4_46	95

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07561	C0GCE3_9FIRM_6_46	97.2

Sequence based PCA Plot of the family - PF07561 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=17 Length=8
Motif2 Start=34 Length=8
Motif3 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay