3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07555

Details:

PFam ID : PF07555

PFam Domain Description : beta-N-acetylglucosaminidase

Number of Sequence in 50% Dataset : 45

Number of Sequence in Full Dataset : 178

Average sequence length: 288.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07555	F2TAR8_AJEDE_191_299	97.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07555	E1GXP9_9BACT_176_506	100

Sequence based PCA Plot of the family - PF07555 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=32 Length=8
Motif2 Start=108 Length=8
Motif3 Start=72 Length=8
Motif4 Start=2 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay