3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07554

Details:

PFam ID : PF07554

PFam Domain Description : FixH

Number of Sequence in 50% Dataset : 141

Number of Sequence in Full Dataset : 1218

Average sequence length: 47.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07554	D1NUN9_9BIFI_137_183	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07554	E6U9D8_ETHHY_1679_1744	73

Sequence based PCA Plot of the family - PF07554 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=43 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay