3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07553

Details:

PFam ID : PF07553

PFam Domain Description : Host cell surface-exposed lipoprotein

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 217

Average sequence length: 46.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07553	D1NUN9_9BIFI_137_183	40

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07553	D7WE29_9CORY_204_252	99.0

Sequence based PCA Plot of the family - PF07553 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=33 Length=11
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay