3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07548

Details:

PFam ID : PF07548

PFam Domain Description : Chlamydia polymorphic membrane protein middle domain

Number of Sequence in 50% Dataset : 43

Number of Sequence in Full Dataset : 113

Average sequence length: 165.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07548	Q823X4_CHLCV_354_526	95.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07548	PMPB_CHLMU_1145_1334	100

Sequence based PCA Plot of the family - PF07548 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=166 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay