3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07542

Details:

PFam ID : PF07542

PFam Domain Description : ATP12 chaperone protein

Number of Sequence in 50% Dataset : 49

Number of Sequence in Full Dataset : 282

Average sequence length: 124.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07542	Q4XAC3_PLACH_1_209	79.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07542	F0XJ44_9PEZI_1053_1220	100

Sequence based PCA Plot of the family - PF07542 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=94 Length=8
Motif2 Start=45 Length=8
Motif3 Start=23 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay