3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07541

Details:

PFam ID : PF07541

PFam Domain Description : Eukaryotic translation initiation factor 2 alpha subunit

Number of Sequence in 50% Dataset : 39

Number of Sequence in Full Dataset : 217

Average sequence length: 113.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07541	C7DID3_9EURY_117_224	60.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07541	D1JBH6_9ARCH_119_237	100

Sequence based PCA Plot of the family - PF07541 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=15 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay