3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07540

Details:

PFam ID : PF07540

PFam Domain Description : Nucleolar complex-associated protein

Number of Sequence in 50% Dataset : 38

Number of Sequence in Full Dataset : 126

Average sequence length: 96.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07540	A8J8L8_CHLRE_84_142	97.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07540	F0VPY5_NEOCA_274_390	100

Sequence based PCA Plot of the family - PF07540 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=33 Length=8
Motif2 Start=24 Length=8
Motif3 Start=15 Length=8
Motif4 Start=62 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay