3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07539

Details:

PFam ID : PF07539

PFam Domain Description : Down-regulated in metastasis

Number of Sequence in 50% Dataset : 51

Number of Sequence in Full Dataset : 123

Average sequence length: 138.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07539	Q2WBX3_PLADU_1_50	12

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07539	D8LFJ6_ECTSI_1278_1441	100

Sequence based PCA Plot of the family - PF07539 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=12 Length=8
Motif2 Start=3 Length=8
Motif3 Start=66 Length=8
Motif4 Start=37 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay