3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07536

Details:

PFam ID : PF07536

PFam Domain Description : HWE histidine kinase

Number of Sequence in 50% Dataset : 108

Number of Sequence in Full Dataset : 471

Average sequence length: 81.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07536	B7RJ14_9RHOB_174_229	98.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07536	Q1QGY3_NITHX_367_457	100

Sequence based PCA Plot of the family - PF07536 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=1 Length=17
Motif3 Start=37 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay