3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07534

Details:

PFam ID : PF07534

PFam Domain Description : TLD

Number of Sequence in 50% Dataset : 323

Number of Sequence in Full Dataset : 766

Average sequence length: 137.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07534	B8C843_THAPS_77_276	88.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07534	D2V600_NAEGR_75_244	99.4

Sequence based PCA Plot of the family - PF07534 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=2 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay