3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07532

Details:

PFam ID : PF07532

PFam Domain Description : Bacterial Ig-like domain (group 4)

Number of Sequence in 50% Dataset : 159

Number of Sequence in Full Dataset : 354

Average sequence length: 62.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07532	D6Y076_BACIE_297_383	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07532	Q5GY45_XANOR_1242_1326	99.7

Sequence based PCA Plot of the family - PF07532 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=34 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=25 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay