3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07529

Details:

PFam ID : PF07529

PFam Domain Description : HSA

Number of Sequence in 50% Dataset : 49

Number of Sequence in Full Dataset : 271

Average sequence length: 69.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07529	B7QDK0_IXOSC_1_48	25

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07529	E5A1N6_LEPMC_337_439	79

Sequence based PCA Plot of the family - PF07529 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=25 Length=8
Motif2 Start=16 Length=8
Motif3 Start=7 Length=8
Motif4 Start=66 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay