3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07528

Details:

PFam ID : PF07528

PFam Domain Description : DZF domain

Number of Sequence in 50% Dataset : 33

Number of Sequence in Full Dataset : 106

Average sequence length: 194.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07528	A8XTK0_CAEBR_492_727	65.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07528	E4XDL4_OIKDI_348_596	100

Sequence based PCA Plot of the family - PF07528 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay