3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07527

Details:

PFam ID : PF07527

PFam Domain Description : Hairy Orange

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 215

Average sequence length: 42.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07527	A3KQ57_DANRE_83_125	96.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07527	Q6JJ70_STRPU_98_141	99.0

Sequence based PCA Plot of the family - PF07527 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=3 Length=17
Motif2 Start=31 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay