3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07526

Details:

PFam ID : PF07526

PFam Domain Description : Associated with HOX

Number of Sequence in 50% Dataset : 27

Number of Sequence in Full Dataset : 141

Average sequence length: 126.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07526	A3ALF5_ORYSJ_139_202	19.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07526	F2D8D2_HORVD_299_447	100

Sequence based PCA Plot of the family - PF07526 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=15 Length=8
Motif2 Start=6 Length=8
Motif3 Start=130 Length=8
Motif4 Start=166 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay