3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07524

Details:

PFam ID : PF07524

PFam Domain Description : Bromodomain associated

Number of Sequence in 50% Dataset : 81

Number of Sequence in Full Dataset : 272

Average sequence length: 73.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07524	A2DWG6_TRIVA_26_85	36.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07524	Q2GQU4_CHAGB_789_879	99.6

Sequence based PCA Plot of the family - PF07524 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay