3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07523

Details:

PFam ID : PF07523

PFam Domain Description : Bacterial Ig-like domain (group 3)

Number of Sequence in 50% Dataset : 113

Number of Sequence in Full Dataset : 504

Average sequence length: 68.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07523	E3WIG0_9LACO_10_63	40.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07523	A9NHL0_ACHLI_64_132	91.0

Sequence based PCA Plot of the family - PF07523 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=22 Length=20
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay