3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07522

Details:

PFam ID : PF07522

PFam Domain Description : DNA repair metallo-beta-lactamase

Number of Sequence in 50% Dataset : 98

Number of Sequence in Full Dataset : 263

Average sequence length: 105.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07522	A3MV01_PYRCJ_224_289	97.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07522	A3LR86_PICST_439_605	100

Sequence based PCA Plot of the family - PF07522 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=121 Length=8
Motif2 Start=6 Length=11
Motif3 Start=46 Length=8
Motif4 Start=102 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay