3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07520

Details:

PFam ID : PF07520

PFam Domain Description : Virulence factor SrfB

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 63

Average sequence length: 881.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07520	A9R964_YERPG_832_987	92.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07520	D2QUF7_SPILD_1_1044	100

Sequence based PCA Plot of the family - PF07520 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=31 Length=8
Motif2 Start=10 Length=8
Motif3 Start=67 Length=8
Motif4 Start=146 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay