3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07507

Details:

PFam ID : PF07507

PFam Domain Description : WavE lipopolysaccharide synthesis

Number of Sequence in 50% Dataset : 24

Number of Sequence in Full Dataset : 38

Average sequence length: 281.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07507	Q692K4_YEREN_31_191	95.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07507	C8Q025_9GAMM_11_341	100

Sequence based PCA Plot of the family - PF07507 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=14
Motif2 Start=46 Length=8
Motif3 Start=66 Length=8
Motif4 Start=114 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay