3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07504

Details:

PFam ID : PF07504

PFam Domain Description : Fungalysin/Thermolysin Propeptide Motif

Number of Sequence in 50% Dataset : 72

Number of Sequence in Full Dataset : 379

Average sequence length: 49.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07504	A7S110_NEMVE_24_115	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07504	Q1CZ97_MYXXD_117_167	99.7

Sequence based PCA Plot of the family - PF07504 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=41 Length=8
Motif2 Start=32 Length=8
Motif3 Start=1 Length=8
Motif4 Start=23 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay