3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07503

Details:

PFam ID : PF07503

PFam Domain Description : HypF finger

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 897

Average sequence length: 34.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07503	A7S110_NEMVE_24_115	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07503	D1PPE4_9FIRM_1_27	100

Sequence based PCA Plot of the family - PF07503 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=9 Length=11
Motif2 Start=23 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay