3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07500

Details:

PFam ID : PF07500

PFam Domain Description : Transcription factor S-II (TFIIS), central domain

Number of Sequence in 50% Dataset : 122

Number of Sequence in Full Dataset : 371

Average sequence length: 112.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07500	B9GU04_POPTR_1194_1227	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07500	A9YVS2_OSV5_1_99	99.7

Sequence based PCA Plot of the family - PF07500 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=102 Length=8
Motif3 Start=89 Length=8
Motif4 Start=115 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay