3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07496

Details:

PFam ID : PF07496

PFam Domain Description : CW-type Zinc Finger

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 247

Average sequence length: 48.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07496	B9GU04_POPTR_1194_1227	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07496	D8TSL1_VOLCA_1014_1041	99.5

Sequence based PCA Plot of the family - PF07496 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=24 Length=11
Motif2 Start=3 Length=20

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay