3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07495

Details:

PFam ID : PF07495

PFam Domain Description : Y_Y_Y domain

Number of Sequence in 50% Dataset : 230

Number of Sequence in Full Dataset : 1167

Average sequence length: 64.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07495	B9XR13_9BACT_296_319	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07495	D9SWK5_CLOC7_384_451	100

Sequence based PCA Plot of the family - PF07495 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=32 Length=20
Motif2 Start=17 Length=8
Motif3 Start=8 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay