3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07494

Details:

PFam ID : PF07494

PFam Domain Description : Two component regulator propeller

Number of Sequence in 50% Dataset : 153

Number of Sequence in Full Dataset : 2926

Average sequence length: 23.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07494	B9XR13_9BACT_296_319	96.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07494	B9XR13_9BACT_296_319	90.2

Sequence based PCA Plot of the family - PF07494 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=11
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay