3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07489

Details:

PFam ID : PF07489

PFam Domain Description : Translocated intimin receptor (Tir) C-terminus

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 11

Average sequence length: 177.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07489	E7HCT3_ECOLX_1_58	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07489	Q2F7Z0_ECOLX_337_549	100

Sequence based PCA Plot of the family - PF07489 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=164 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay