3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07488

Details:

PFam ID : PF07488

PFam Domain Description : Glycosyl hydrolase family 67 middle domain

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 145

Average sequence length: 305.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07488	D9CI90_9FUNG_1_92	71.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07488	D8HQZ3_AMYMU_196_554	100

Sequence based PCA Plot of the family - PF07488 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=80 Length=11
Motif2 Start=147 Length=8
Motif3 Start=101 Length=35

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay