3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07486

Details:

PFam ID : PF07486

PFam Domain Description : Cell Wall Hydrolase

Number of Sequence in 50% Dataset : 85

Number of Sequence in Full Dataset : 603

Average sequence length: 104.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07486	C0ZEU7_BREBN_1_75	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07486	C0CQ39_9FIRM_526_662	100

Sequence based PCA Plot of the family - PF07486 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=31 Length=18
Motif2 Start=99 Length=8
Motif3 Start=11 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay