3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07481

Details:

PFam ID : PF07481

PFam Domain Description : Domain of Unknown Function (DUF1521)

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 14

Average sequence length: 139.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07481	E3FDH5_STIAD_98_217	87.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07481	C9NP63_9VIBR_72_249	100

Sequence based PCA Plot of the family - PF07481 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=42 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay