3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07479

Details:

PFam ID : PF07479

PFam Domain Description : NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus

Number of Sequence in 50% Dataset : 65

Number of Sequence in Full Dataset : 1356

Average sequence length: 143.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07479	B7XMH6_ENTBH_192_301	60.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07479	B0SKB5_LEPBP_196_362	100

Sequence based PCA Plot of the family - PF07479 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=15 Length=24
Motif3 Start=53 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay