3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07478

Details:

PFam ID : PF07478

PFam Domain Description : D-ala D-ala ligase C-terminus

Number of Sequence in 50% Dataset : 221

Number of Sequence in Full Dataset : 1713

Average sequence length: 194.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07478	F0YJR4_9STRA_346_596	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07478	A9UYM4_MONBE_555_790	99.9

Sequence based PCA Plot of the family - PF07478 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=111 Length=11
Motif2 Start=99 Length=8
Motif3 Start=9 Length=20

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay