3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07477

Details:

PFam ID : PF07477

PFam Domain Description : Glycosyl hydrolase family 67 C-terminus

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 152

Average sequence length: 215.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07477	F0YJR4_9STRA_346_596	58.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07477	B8LVS9_TALSN_9_82	100

Sequence based PCA Plot of the family - PF07477 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=202 Length=11
Motif2 Start=100 Length=8
Motif3 Start=7 Length=14
Motif4 Start=134 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay