3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07475

Details:

PFam ID : PF07475

PFam Domain Description : HPr Serine kinase C-terminal domain

Number of Sequence in 50% Dataset : 44

Number of Sequence in Full Dataset : 495

Average sequence length: 143.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07475	Q04901_HALRO_309_508	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07475	Q6KIA8_MYCMO_147_320	100

Sequence based PCA Plot of the family - PF07475 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=25 Length=8
Motif2 Start=42 Length=8
Motif3 Start=138 Length=8
Motif4 Start=72 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay