3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07474

Details:

PFam ID : PF07474

PFam Domain Description : G2F domain

Number of Sequence in 50% Dataset : 22

Number of Sequence in Full Dataset : 63

Average sequence length: 177.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07474	Q04901_HALRO_309_508	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07474	Q04901_HALRO_309_508	100

Sequence based PCA Plot of the family - PF07474 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=69 Length=8
Motif2 Start=15 Length=8
Motif3 Start=5 Length=8
Motif4 Start=109 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay