3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07470

Details:

PFam ID : PF07470

PFam Domain Description : Glycosyl Hydrolase Family 88

Number of Sequence in 50% Dataset : 183

Number of Sequence in Full Dataset : 879

Average sequence length: 328.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07470	Q6YNX3_AMACA_2_154	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07470	B7AGB9_9BACE_46_408	100

Sequence based PCA Plot of the family - PF07470 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=274 Length=8
Motif3 Start=169 Length=8
Motif4 Start=125 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay