3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07469

Details:

PFam ID : PF07469

PFam Domain Description : Domain of unknown function (DUF1518)

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 26

Average sequence length: 54.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07469	Q6YNX3_AMACA_2_154	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07469	A8WGE8_XENTR_1206_1255	88

Sequence based PCA Plot of the family - PF07469 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=16 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay