3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07463

Details:

PFam ID : PF07463

PFam Domain Description : NUMOD4 motif

Number of Sequence in 50% Dataset : 76

Number of Sequence in Full Dataset : 173

Average sequence length: 52

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07463	A9BYQ9_DELAS_12_69	28

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07463	D7Y7U1_ECOLX_3_66	100

Sequence based PCA Plot of the family - PF07463 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay