3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07462

Details:

PFam ID : PF07462

PFam Domain Description : Merozoite surface protein 1 (MSP1) C-terminus

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 75

Average sequence length: 341.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07462	Q9TYG1_PLAFA_303_354	29.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07462	Q25684_PLACH_359_478	98.6

Sequence based PCA Plot of the family - PF07462 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay