3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07460

Details:

PFam ID : PF07460

PFam Domain Description : NUMOD3 motif (2 copies)

Number of Sequence in 50% Dataset : 100

Number of Sequence in Full Dataset : 343

Average sequence length: 32.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07460	C2Q4Y0_BACCE_38_77	15.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07460	Q0ILG3_9CAUD_194_233	74

Sequence based PCA Plot of the family - PF07460 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=20 Length=8
Motif2 Start=1 Length=8
Motif3 Start=11 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay