3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07453

Details:

PFam ID : PF07453

PFam Domain Description : NUMOD1 domain

Number of Sequence in 50% Dataset : 103

Number of Sequence in Full Dataset : 206

Average sequence length: 36.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07453	B4Y556_9ASCO_50_89	9.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07453	A2CG33_MOUSE_528_604	94.2

Sequence based PCA Plot of the family - PF07453 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay