3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07452

Details:

PFam ID : PF07452

PFam Domain Description : CHRD domain

Number of Sequence in 50% Dataset : 145

Number of Sequence in Full Dataset : 295

Average sequence length: 117.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07452	A0YMR7_LYNSP_67_108	70.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07452	A2CG33_MOUSE_528_604	94.2

Sequence based PCA Plot of the family - PF07452 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=148 Length=8
Motif4 Start=158 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay