3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07450

Details:

PFam ID : PF07450

PFam Domain Description : Formate hydrogenlyase maturation protein HycH

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 52

Average sequence length: 122.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07450	A7GWN4_CAMC5_1_98	75

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07450	C7MLM9_CRYCD_21_164	100

Sequence based PCA Plot of the family - PF07450 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=17 Length=23
Motif2 Start=1 Length=8
Motif3 Start=59 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay