3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07447

Details:

PFam ID : PF07447

PFam Domain Description : Matrix protein VP40

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 7

Average sequence length: 251.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07447	VP40_EBOSU_1_295	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07447	VP40_EBOSU_1_295	100

Sequence based PCA Plot of the family - PF07447 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=139 Length=8
Motif3 Start=92 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay