3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07444

Details:

PFam ID : PF07444

PFam Domain Description : Ycf66 protein N-terminus

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 67

Average sequence length: 80

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07444	B4W1E1_9CYAN_1_40	60

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07444	Q2JKJ3_SYNJB_1_84	92.4

Sequence based PCA Plot of the family - PF07444 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=54 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay